Well, look at the stock hyundai intakes, they had that big resonator thingy in the dip... it was just a water catcher... the air swirls down there, sheading the water, and it flows out of the drain at the bottom. You wont have room for all that, and it kills flow.
If you want to make ot work effectively, then your going to work at it alot. Just how it is. but one things for sure, it will look baddass once you get it done and working.